This is a source code of GCoffee algorithm. Here we present short instruction of how to compile and invoke the G-MSA program. 

To create a Makefile type in the console:

./configure

If any of dependencies won't be installed on the machine one should get the corresponding information. To compile application one should have installed following binaries:

 * nvcc -- the NVIDIA CUDA compiler
 * bison -- the parser generator
 * flex -- the lexical analyzer

To compile type in console:

make

To use application type:

./gmsa

Setting up application parameters:

<editor> etc/default.cnf
<editor> etc/<algoritm>-default.cnf

To save default values from modifying one can create their own *.cnf file and pass it to the application. One can do it as follows:

./gmsa file.cnf

For all variables the default values will be overwritten with those from file.cnf. 

